Choose the terms of payment (betalningsvillkor) on the Fortnox order that tells Junipeer the order was paid with Qliro.
Only orders with this terms of payment are handled as Qliro orders.
Good to know
The list shows the values in your Fortnox. If the list is empty, check that Fortnox is connected. An empty list almost always means the connection, not the setting.
If a value is missing, create it in Fortnox first, then click Clear Cache on the settings page so the list is refreshed.